Time series anomaly detection with “anomalize” library | by Mahbubul Alam | Sep, 2020


Like in every other device studying set of rules, making ready knowledge is one of the crucial vital step you’ll take in opposition to anomaly detection. On the certain facet despite the fact that, you’ll most likely use just one column at a time. So in contrast to masses of options in different device studying tactics, you’ll center of attention on just one column this is getting used for modeling.

Make certain that you just undergo the standard ritual of knowledge cleansing and preparation reminiscent of taking good care of lacking values and many others. One very important step is to make certain that the dataset is in a tibble or tbl_time object in any case.

Let’s first set up the libraries we’re going to want:

# set up libraries

For this demo we’re in just right good fortune, no knowledge processing required. We are going to fetch inventory value knowledge the use of tidyquant library.

# fetch knowledge
knowledge <- tq_get('AAPL',
from = "2019-09-01",
to = "2020-02-28",
get = "inventory.costs")
# take a peek

First, let’s enforce anomalize with the information that we simply fetched after which discuss what’s happening.

# anomalize 
anomalized <- knowledge %>%
time_decompose(shut) %>%
anomalize(the rest) %>%

Few issues are happening right here, the library takes in enter knowledge and applies 3 separate purposes to it.

First,time_decompose() serve as decomposes “shut” column of the time series knowledge into “practice”, “season”, “pattern” and “the rest” elements.

Second,anomalize() serve as plays anomaly detection at the “the rest” column and offers outputs in Three columns: “remainder_l1”, “remainder_l2” and “anomaly”. The ultimate column here’s what we’re after, it’s “sure” if the commentary is an anomaly and “no” for a standard knowledge level.

Outputs of anomalize implementation

The ultimate serve as time_recompose() places the entirety again into order by recomposing “pattern” and “season” columns created previous.

For all intents and functions, our anomaly detection is whole within the earlier step. But we nonetheless wish to visualize the information and the anomalies. Let’s do this and visually take a look at the outliers.

# plot knowledge with anomalies
anomalized %>%
plot_anomalies(time_recomposed = TRUE, ncol = 3, alpha_dots = 0.25) + labs(identify = "AAPL Anomalies")

The determine is lovely intuitive. Each dot is an noticed knowledge level within the dataset and purple circles are anomalies as recognized by the fashion. The shaded spaces are the higher and decrease limits of the remainders.

If you could have come alongside to this point, you could have effectively carried out a complicated anomaly detection method in 3 easy steps. That used to be simple as a result of we used default parameters and didn’t exchange the rest. As we noticed within the determine above, this out of the field fashion carried out lovely smartly in detecting outliers. However, you may come throughout complicated time series knowledge that may require higher fashion efficiency by tuning parameters in step 2. You can learn the model documentation and the quick starter guide to get a way of the parameters, what they do and the way & when to switch them.

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